Skip to content

SNAKEMAKE

Linters

Linter Configuration key
snakemake SNAKEMAKE_LINT
snakefmt SNAKEMAKE_SNAKEFMT

Linted files

  • File extensions:
    • .smk
  • File names:
    • Snakefile

Configuration in MegaLinter

Variable Description Default value
SNAKEMAKE_FILTER_REGEX_INCLUDE Custom regex including filter
SNAKEMAKE_FILTER_REGEX_EXCLUDE Custom regex excluding filter