SNAKEMAKE
Linters
Linter | Additional |
---|---|
snakemake SNAKEMAKE_LINT |
|
snakefmt SNAKEMAKE_SNAKEFMT |
Linted files
- File extensions:
.smk
- File names:
Snakefile
Configuration in MegaLinter
Variable | Description | Default value |
---|---|---|
SNAKEMAKE_PRE_COMMANDS | List of bash commands to run before the linters | None |
SNAKEMAKE_POST_COMMANDS | List of bash commands to run after the linters | None |
SNAKEMAKE_FILTER_REGEX_INCLUDE | Custom regex including filter | |
SNAKEMAKE_FILTER_REGEX_EXCLUDE | Custom regex excluding filter |