SNAKEMAKE
Linters
| Linter | Additional |
|---|---|
| snakemake SNAKEMAKE_LINT |
 |
| snakefmt SNAKEMAKE_SNAKEFMT |
 |
Linted files
- File extensions:
.smk
- File names:
Snakefile
Configuration in MegaLinter
| Variable | Description | Default value |
|---|---|---|
| SNAKEMAKE_PRE_COMMANDS | List of bash commands to run before the linters | None |
| SNAKEMAKE_POST_COMMANDS | List of bash commands to run after the linters | None |
| SNAKEMAKE_FILTER_REGEX_INCLUDE | Custom regex including filter | |
| SNAKEMAKE_FILTER_REGEX_EXCLUDE | Custom regex excluding filter |